Computational Neuroscience
Faculty Advisers: Jack D. Cowan, Mathematics, Ry 356, 702-1076,
cowan@math.uchicago.edu; Terry Regier, Psychology, Gr 414,
702-0918, regier@uchicago.edu; Philip S. Ulinski, Organismal Biology
and Anatomy, CH 206, 702-8081, pulinski@midway.uchicago.edu
Computational neuroscience is a relatively new interdisciplinary
area of inquiry that is concerned with how components of animal and human nervous
systems interact to produce behaviors. It relies on quantitative and modeling
approaches to understand the function of the nervous system and to design human-made
devices that duplicate behaviors. Course work in computational neuroscience
can prepare students for graduate studies in neurobiology or psychology, or
in the mathematical or engineering sciences. It can lead to either traditional
academic careers or to opportunities in the corporate world.
An undergraduate degree in computational neuroscience is not
available at the University of Chicago, but students concentrating in biological
sciences, computer science, mathematics, physics, psychology, or statistics
can easily fashion an organized course of study in computational neuroscience
by selecting appropriate general education courses and general education electives.
Suggested General Education Courses:
Students concentrating in Biological Science should elect either the
BIOS 18000s or 19000s sequence. Students who do not elect this
sequence should elect BIOS 10200 and 10201.
MATH 15100-15200. Calculus I, II
or MATH 16100-16200. Honors Calculus I, II
SOSC 14100-14200-14300. Mind I, II, III
Suggested Electives:
BIOS 24221-24222-24223. Computational Neuroscience I, II, III
MATH 15300. Calculus III
or MATH 16300. Honors Calculus III
MATH 25000 and 27300, followed by MATH 32000-32200.
Students who are interested in computational neuroscience and
are concentrating in biological sciences, mathematics, or psychology may also
wish to elect the courses that follow.
Biological Sciences:
BIOS 24204. Cellular Neurobiology
BIOS 24205. Systems Neuroscience
BIOS 24211. Neuroethology
Psychology:
PSYC 20700. Experimental Approaches to
Systems Neurobiology
PSYC 25600. Introduction to Cognitive Psychology
PSYC 28000. Sensation and Perception
PSYC 28300. Attention
Faculty associated with this interdisciplinary area participate
in a three-quarter sequence in computational neuroscience, teach upper-level
courses relevant to computational neuroscience, and participate in an ongoing
Computational Neuroscience Seminar series.
Faculty
Yali Amit, Associate Professor, Department of Statistics and
the College
Bennet bertenthal, Professor, Department of Psychology and
the College
DAVID BRADLEY, Assistant Professor, Department of Psychology
and the College
Zhiyi CHI, Assistant Professor, Department of Statistics and
the College
Jack Cowan, Professor, Departments of Mathematics and Neurology,
and the College
JOHN GOLDSMITH, Edward Carson Waller Distinguished Service
Professor, Department of Linguistics
Dorothy Hanck, Associate Professor, Department of Medicine,
Committees on Cell Physiology and Neurobiology, and the College
Leslie Kay, Assistant Professor, Department of Psychology and
the College
VERA MALJKOVIC, Assistant Professor, Department of Psychology
and the College
Daniel Margoliash, Associate Professor, Departments of Organismal
Biology & Anatomy, and Psychology, Committee on Neurobiology, and the College
Martha McClintock, Professor, Department of Psychology, Committee
on Neurobiology, and the College
John Milton, Associate Professor, Department of Neurology,
Committee on Neurobiology
Partha Niyogi, Assistant Professor, Department of Computer
Science
Howard Nusbaum, Professor, Department of Psychology and the
College
Joel Pokorny, Professor, Departments of Ophthalmology &
Visual Science and Psychology
Jan-Marino Ramirez, Assistant Professor, Department of Organismal
Biology & Anatomy and Committee on Neurobiology
Terry Regier, Assistant Professor, Department of Psychology
Steven Shevell, Professor, Departments of Psychology and Ophthalmology
& Visual Sciences, and the College
Vivianne Smith-Pokorny, Professor, Departments of Ophthalmology
& Visual Science and Psychology
V. Leo Towle, Associate Professor, Departments of Neurology
and Surgery
Philip S. Ulinski, Professor, Department of Organismal Biology
& Anatomy, Committee on Neurobiology, and the College
Courses
For a description of the numbering guidelines for the following
courses, consult the section on reading the catalog on page 15.
L refers to courses with a laboratory.
For descriptions of the following courses, consult the relevant
concentration sections of the catalog.
Computational Neuroscience Sequence
BIOS 24211. Computational Neuroscience I: Single Neuron Computation (=ORGB 34400). PQ: Prior course in cellular neurobiology or consent of instructor. Prior or concurrent registration in MATH 20000 recommended. P. Ulinski, Staff. Autumn. L.
BIOS 24222. Computational Neuroscience II: Vision (=ORGB 34500, PSYC 32400). PQ: BIOS 28700 and a prior course in systems neurobiology, or consent of instructor. Prior or concurrent registration in MATH 20100 recommended. P. Ulinski, Staff. Winter. L.
BIOS 24223. Computational Neuroscience III: Language (=ORGB 34600, PSYC 34400). PQ: Consent of instructor. T. Regier, Staff. Spring.
Courses in Cell and Molecular Neurobiology
BIOS 24236. Cellular Neurobiology. PQ: Completion of the general education requirement for the biological sciences. Prior physics course recommended. D. Hanck, P. Lloyd. Spring.
BIOS 24204. Cellular Neurobiology. PQ: Completion of the general education requirement for the biological sciences. Prior physics course recommended. D. Hanck, P. Lloyd. Spring. L.
NPHP 31800. Cellular Neurobiology. This course is concerned with the structure and function of the nervous system at the cellular level. The cellular and subcellular components of neurons and their basic membrane and electrophysiological properties are described. Cellular and molecular aspects of interactions between neurons are studied. This leads to functional analyses of the mechanisms involved in the generation and modulation of behavior in selected model systems. P. Lloyd. Autumn.
NPHP 32300. Molecular Neurobiology. This course is devoted to the examination of current research in the molecular biology of the nervous system. We explore the structure and function of macromolecules that control, propagate, and elicit neural signaling. Topics include: (1) structural elements of neurons and glia, (2) structure and function of the synapse, (3) aspects of the molecular basis of neural signaling, and (4) gene expression in neural systems. Lectures draw on current journal literature to present a state-of-the-art background of the topic and the current questions being explored, as well as problems and aspects. W. Green, D. McGehee, K. Houamed. Spring.
Courses in Systems Neurobiology
BIOS 24205. Systems Neuroscience. PQ: BIOS 24236 or 24204, or consent of instructor. J. Ramirez, C. Ragsdale, J. Goldberg. Autumn. L.
BIOS 24211. Neuroethology (=PSYC 31500). PQ: BIOS 24204 or consent of instructor. Prior or concurrent registration in PHYS 14200. Prior knowledge of basic cellular mechanisms of neurons and basic anatomy of the vertebrate central nervous system. Labs meet once a week and may require time beyond the posted schedule. D. Margoliash. Winter. L.
NPHP 31500. Mammalian Neuroanatomy. This is a lab-centered course that teaches students the basic anatomy of the mammalian CNS and PNS. This course is coordinated with NURB 31600. Students learn the major structures present at each level of the neuraxis and to recognize them in rodents, cats, and primates. Somatosensory, visual, auditory, vestibular, and olfactory sensory systems are presented in more depth. For each of these sensory systems, as well as for the motor system, the nuclear organization and cellular architecture of selected regions is discussed. P. Mason, R. McCrea. Autumn. L.
NPHP 31600. Neurophysiology. This is a seminar course that teaches students the basic physiology of the mammalian CNS and PNS. Students study the physiology that is associated with the sensory and motor systems studied in NPHP 31500. In addition to reading review chapters, students read classic original articles. P. Mason, R. McCrea. Winter.
Courses in Psychophysics and Cognitive Science
PSYC 25600. Introduction to Cognitive Psychology (=EDUC 25600/35600). V. Maljkovic. Winter. Not offered 2001-02; will be offered 2002-03.
PSYC 28000. Sensation and Perception (=BPSY 28000). D. Bradley. Winter. Not offered 2001-02; will be offered 2002-03.
PSYC 28300/38300. Attention (=BPSY 28300). V. Maljkovic, H. Nusbaum. Winter.
PSYC 32600. Speech Perception. H. Nusbaum. Spring. Not offered 2001-02; will be offered 2002-03.
PSYC 38500. Cognitive Neuropsychology (=BPSY 38300). H. Nusbaum. Winter. Not offered 2001-02; will be offered 2002-03.
PSYC 38700. Connectionist Modeling: Techniques. PQ: Knowledge of programming, basic calculus, and linear algebra helpful. T. Regier. Winter. Not offered 2001-02; will be offered 2002-03.
Courses in Mathematics
MATH 32000. Mathematical and Statistical Methods for Neuroscience I. J. Cowan. Autumn. L.
MATH 32100. Mathematical and Statistical Methods for Neuroscience II. Y. Amit. Winter. L.
MATH 32200. Mathematical and Statistical Methods of Neuroscience III. J. Cowan. Spring. L.
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